Sunday, July 18, 2010

Life minus Nine

We define life in many ways. All the research in the world is aimed primarily at only one target - improving human lives. The past steps lead us to a new gate called ‘nanotechnology'. Although research in this field has been going on for decades, it is only now that the focus light is turned on. It will be worthwhile to spend some time on it.

Nanotechnology, like life, can be defined in many ways, its areas extending far beyond just physics, chemistry, or biology. Here, I try to relate these hard-to-define terms, "life" and "nano". What would life be 'minus nine'? I would rather prefer to talk about life 'plus' nine.

It is customary to define nanoparticles or nanostructures as entities in the range of sizes from 1 - 100 nm, thus many biological materials can be classified as nanoparticles. Considering a gradation in this range, we can include, viruses, which range in size between 10 to 200 nm, in the upper part of the nanoparticle range. Proteins, ranging between 4 and 50 nm, are in the low nanometer range, while the building blocks of proteins, the amino acids - each about 0.6 nm in size - are below the lower limit of a nanoparticle. These are a few of the examples that could be considered in the nanoscale. The structures made up by these particles sometimes end up in the same range too.

A protein is a combination of any of the 20 amino acids, bound together one after the other by strong peptide chemical bonds. These chains called polypeptides contain hundreds, and in some cases thousands of amino acids; hence they correspond to "nanowires". The polypeptide nanowires further undergo twistings and turnings to compact themselves into a relatively small volume forming a polypeptide nanoparticle, with a diameter that is typically in the range of 4 - 50 nm. Thus a protein is a nanoparticle consisting of a compacted polypeptide nanowire.

The genetic material deoxyribonucleic acid (DNA) has the structure of a compacted nanowire. It is made up of 4 nucleotide molecules that bind together in a long double helix to form chromosomes. Thus the DNA molecule is a double-nanowire, with the strands twisted around each other with a repeat unit every 3.4 nm, and a diameter of 2 nm.

Another biological structure made up of subunits in the nanometer range size is the human tendon. The function of a tendon is to attach a muscle to a bone. The fundamental building block of a tendon is the assemblage of amino acids that form a gelatin- like protein called 'collagen' (1 nm), which coils into a triple helix (2 nm). Further arrangement then follows a three-fold sequence of fibrillar nanostructures: a microfibril (3 - 5 nm), a subfibril (10 - 20 nm), and a fibril itself (50 - 500 nm). These nanostructures then make up the macroscopic tendon.

A view of these biological nanostructures would give us an idea what role the study of nanoparticles plays in biology. Taken to the scrap, many important biomolecules may end up in nanoparticles. Since the smallest amino acid, glycine is 0.42 nm in size, and some viruses reach 200 nm, it will be appropriate to define a biological nanostructure as being in the nominal range from 0.5 to 200 nm. It is our discretion to study them as a separate class, to place them in a separate group, or to create a new field called 'nanobiotechnology'.

Remember, best things come in small packages!
 

Saturday, July 17, 2010

பழைய படம்

"இந்த  வாழ்க்கைப்  பயணம் போற போக்குல உணர்வுகளையும், உறவுகளையும் குழி தோண்டி பொதச்சுட்டு அப்டி எத தேடிகிட்டு போறோம்?"

"Leaving behind our feelings and our relatives/friends, where are we proceeding in this journey of life?"

Pazhaya Padam (non-native speakers of Tamil, read as ‘Palaya Padam’) is a short film made by the MGR Film Institute, Chennai, India. By short, I mean it’s really short – just about fifteen minutes. There are two reasons why I write about this film. One, the story they try telling us is so close to my heart; I have had the same feelings as shown in the movie, which is because I’m sentimental. Second, the music was scored by my very good friend Justin Prabhakaran, my undergrad classmate.

We live in an era, where sentiments have taken a backseat. In our race to succeed, and survive, we take every stride possible, not knowing what we lose behind. The film portrays an old man, living alone in a village, waiting for his grandson to come and see him. And when it happens, the loving grandson could not keep his grandfather with him for long, given his economical situation, and his parents wish to stay away. The film makes its point clear: What is it that makes a person happy, especially if you are old, weak, and lonely? It is the love of your children. Making up for lost time will never happen.

The film’s music, as for any short film, is a 'method' score, with some tear-jerking violin pieces and pleasant humming.  But for a first-timer (and when it is just his project), this is a very good attempt. I’m tempted to add a personal comment here: This guy won the best singer award in the whole of Madurai district in a competition ‘College Kondattam’ conducted by Jaya TV. We also won the prize for best group performance for a song composed and written by him. To me, he just seems to improve with every song he composes (sorry that I talk about something you have not heard)…

Coming back to the film’s music, we cannot expect any variety in a short film, that too one with such an emotional script. But with the limited scope, the music composer has done a great job, mixing a more subtle Indian tone throughout. Of course, there are clichéd music pieces like the sunrise scene which has “Kowsalya supraja ramapoorva” keerthanai in its background. I cannot count how many movies I have seen with such a scene, and with the same background music. But it is apt for such a film, as it takes the message across quickly. Now that he is with Harris Jeyaraj, we’ll hope he learns a few more tricks in the trade and comes back to the focus light, probably as a music director for a feature film.

The film’s title, literally meaning ‘An Old Portrait’ brings out the theme beautifully. We always think we can get back to our old times, our native town, and our childhood play grounds after finishing our job, and get to enjoy them the same way we did years ago. The same applies to spending time with your family. But we do not realize that time goes on, and doesn’t bother to wait for our return. So when we do return, all we see is just an old portrait of the times we missed. 

"எப்பவாவது இந்த உறவுகல பத்தி நினைவுகள் வரும்போது எல்லாமே பழைய படமா மாறிப் போயிருக்கும்..."

For the short movie:   Pazhaya Padam - Part I
                                       Pazhaya Padam - Part II

Thursday, July 15, 2010

Elements of Fire: Air, Fuel, and Heat


It was the first lab for the summer and the students were so engrossed in finishing the experiment as early as possible. Well, they were just half an hour into the experiment! And I, as usual, was enjoying teaching a lab course (more than the stressful recitation). It was a course I had taught before, and I had an air of confidence around me.

The experiment that day involved the analysis of effect of temperature on acid-base reaction. The Teaching Assistants (TAs) including me had in their hands what we called a ‘striker’ used to light a burner. It was my favorite asset in the lab, and I went around revolving it in my hand. Through the experiment, I lighted a few of the students’ burners and suddenly we heard an alarm in the lab. Within seconds, the building’s fire alarm went off. Great! That was a good start to a course! I checked through the lab to make sure we did not start a fire. We did not. As everyone, we had to go out. We sent out the students and cleared the building. It was always a wonderful sight seeing so many people standing across the road all worried about the experiments they left, the laptops which were open, and of course, unfinished coffee!

Siren. The fire engines were here. The fire personnel shuffled in and out, and about forty five minutes later, we were let in. Obviously, there was no great fire in the building. There were four other TAs with me and we were thinking about coffee as Starbucks was close. I had Caramel Macchiato in mind, but we thought so long that it was now time for us to resume our duties. We were back in, and the experiment which should have ended in one and a half hours was now into its second hour, and finally got over after three and a half hours. Hmmm, I wouldn’t mind a fire alarm once in a while, but it was not destined to be so…

The very next week, there was another alarm, again during my lab! But this time, I did not have a striker in my hand, and we were using just ice! We evacuated the building, and this time, we didn’t think much about coffee; we went straight to the coffee shop exiting the building! But instead of the caramel macchiato I bought an iced Venti, the day’s special. As we returned, we had guesses on how many fire alarms we will have in the forthcoming labs we were teaching. The call back in was quicker this time, and I just had the time to finish my coffee. This experiment was longer. One team was held up in a step: “God is not looking at me today” she said. “I’m sure he’ll turn around soon” was my reply. They finished it fifteen minutes late.

Both these incidents were not drills, as the fire engines would not be there just to make the drills realistic! Fire alarms are good, but it is how sensitive they are that matters. Even then, I would not blame my school’s fire alarm, because the one in my apartment is worse: it shrieked for my cooking!

When we guessed numbers the previous week, we had no idea it would actually occur. How often will one expect a course to be disturbed by a fire alarm in the first two weeks? It was just the fifth experiment in the course, and already the third time we had to evacuate the building because of a fire alarm!! “I enjoyed the break” said a student after returning in. This was today.

We experienced the Elements of Fire: fresh ‘air’ outside the building, re’fuel’ed ourselves with a coffee and ‘heat’: we burnt a few calories teaching in the lab!

Wednesday, July 14, 2010

Welcome to the shaft!


I thought long and hard whether I should create a blog. And I did. But there was more thinking, on what I could write and how often. At last, I am now starting to write in my blog, three years after I created it. It's not just about what I think, but also on what people think.


As of now, I start off with Cinema - my forte, and Science - my occupation! But instead of the usual movie reviews, I think of some general subjects in movies - good cameo roles, best action sequences, and more. And Science as we know it, comes hard on facts. I take it lightly though. Science is fun. So no hardcore details on any subject here, but a little peep into what is really happening and what I/we think about it.


What follow would be my 'spontaneous overflow of emotions recollected in tranquility' as William Wordsworth put it. No poems though, I'm saving them for publishing! ;-) Just my usual practice of writing about something that I don't like, my observations in the street corner, the song I like...


Victuals are food for thoughts. Right, no one would expect a guy to have a column for food! But here it is, a section for food. It is my version of what food is, how we relate food and science, some fun facts, and of course, occasional recipes from my end. You can talk to my roommate on my cooking expertise!


That was quite a long intro! Did not think I would write so much, just happened the way I write an exam. Anyway, read on and let me know how I do...